PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0061s0096.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 282aa    MW: 30716.1 Da    PI: 9.8355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0061s0096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-203484256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d +   +r r +lg+++t+eeAa+a+++a+++l+ge
  Kalax.0061s0096.1.p 34 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84
                         589******.7*********42...35**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.3363491IPR001471AP2/ERF domain
CDDcd000189.78E-313493No hitNo description
Gene3DG3DSA:3.30.730.106.9E-283492IPR001471AP2/ERF domain
SMARTSM003805.4E-343497IPR001471AP2/ERF domain
PfamPF008473.3E-153484IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-203593IPR016177DNA-binding domain
PRINTSPR003672.7E-73546IPR001471AP2/ERF domain
PRINTSPR003672.7E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASCDSTKSR LTGAGGGGGR QQMAMGKAAV AGRRFVGVRQ RPSGRWVAEI KDSCQRVRLW  60
LGTYDTPEEA ARAYDEAARA LRGENARTNY PYSKRPCGSS VNSFGNGDGN HELSCSSLKA  120
KLSKSLQSVM GRSSESSKSS KNRVSDPLTF ASVFHLRGNG GPHEYRHMND TIDKAVQPSI  180
VVPSHEVNQS SSWDSSSLSD SSPDRVTVQS DTVGSDLTEK FFNMERLTCP NQTMNWGSML  240
LDNWQGEFTG NTDSSRRKKF KVSSSVMVPP TFSSFPFNDV K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-123291363ATERF1
3gcc_A2e-123291363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900171.12e-73PREDICTED: dehydration-responsive element-binding protein 2B-like
TrEMBLA0A0S3SY035e-72A0A0S3SY03_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VQY55e-72A0A0L9VQY5_PHAAN; Uncharacterized protein
STRINGPOPTR_0014s07280.14e-66(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-15related to AP2 11